HDF5 related bug in MLFF tutorial in 6.4.3

Problems running VASP: crashes, internal errors, "wrong" results.


Moderators: Global Moderator, Moderator

Post Reply
Message
Author
User avatar
paulfons
Jr. Member
Jr. Member
Posts: 85
Joined: Sun Nov 04, 2012 2:40 am
License Nr.: 5-1405
Location: Yokohama, Japan
Contact:

HDF5 related bug in MLFF tutorial in 6.4.3

#1 Post by paulfons » Wed Jun 26, 2024 8:51 am

I was running the tutorial on machine learning from the Wiki and ran into what appears to be a HDF5 bug. The code is from the latest version (as of this writing) of Vasp 6.4.3 and was the CPU version of the code. I ran the same input files using the GPU version of 6.4.3 and the code ran without error.

I have attached the input and output files below.
10000 T= 425. E= -.86561722E+02 F= -.87605981E+02 E0= -.87605981E+02 EK= 0.10443E+01 SP= 0.00E+00 SK= 0.00E+00
-----------------------------------------------------------------------------
| _ ____ _ _ _____ _ |
| | | | _ \ | | | | / ____| | | |
| | | | |_) | | | | | | | __ | | |
| |_| | _ < | | | | | | |_ | |_| |
| _ | |_) | | |__| | | |__| | _ |
| (_) |____/ \____/ \_____| (_) |
| |
| internal error in: vhdf5.F at line: 114 |
| |
| HDF5 call in vhdf5.F:114 produced error: 29 |
| |
| If you are not a developer, you should not encounter this problem. |
| Please submit a bug report. |
| |
-----------------------------------------------------------------------------

-----------------------------------------------------------------------------
| _ ____ _ _ _____ _ |
| | | | _ \ | | | | / ____| | | |
| | | | |_) | | | | | | | __ | | |
| |_| | _ < | | | | | | |_ | |_| |
| _ | |_) | | |__| | | |__| | _ |
| (_) |____/ \____/ \_____| (_) |
| |
| internal error in: vhdf5.F at line: 114 |
| |
| HDF5 call in vhdf5.F:114 produced error: 29 |
| |
| If you are not a developer, you should not encounter this problem. |
| Please submit a bug report. |
| |
-----------------------------------------------------------------------------

pedro_melo
Global Moderator
Global Moderator
Posts: 138
Joined: Thu Nov 03, 2022 1:03 pm

Re: HDF5 related bug in MLFF tutorial in 6.4.3

#2 Post by pedro_melo » Wed Jun 26, 2024 9:49 am

Dear paulfons,

I think you forgot to attach the files. You could also point me to the tutorial you were running, since we should have the files for that.

Kind regards,
Pedro

User avatar
paulfons
Jr. Member
Jr. Member
Posts: 85
Joined: Sun Nov 04, 2012 2:40 am
License Nr.: 5-1405
Location: Yokohama, Japan
Contact:

Re: HDF5 related bug in MLFF tutorial in 6.4.3

#3 Post by paulfons » Thu Jun 27, 2024 7:15 am

I apologize for not attaching the files correctly. I have (hopefully) attached them now. The tutorial in question was e04, the first tutorial on MLFF on the Vasp Wiki. As I stated before, the CPU 6.4.3 version generated the error while the GPU 6.4.3 version did not. This may be due to some linking problem with the HDF library, but I used the same HDF5 library for both.
You do not have the required permissions to view the files attached to this post.

pedro_melo
Global Moderator
Global Moderator
Posts: 138
Joined: Thu Nov 03, 2022 1:03 pm

Re: HDF5 related bug in MLFF tutorial in 6.4.3

#4 Post by pedro_melo » Fri Jun 28, 2024 1:40 pm

Dear paulfons,

Thank you for the files. I will look into this. Meanwhile, could you also post here the makefile.include files that you used for both compilations?

Kind regards,
Pedro

User avatar
paulfons
Jr. Member
Jr. Member
Posts: 85
Joined: Sun Nov 04, 2012 2:40 am
License Nr.: 5-1405
Location: Yokohama, Japan
Contact:

Re: HDF5 related bug in MLFF tutorial in 6.4.3

#5 Post by paulfons » Fri Jun 28, 2024 11:42 pm

Here is my makefile for 6.4.3 for the CPU version.
You do not have the required permissions to view the files attached to this post.

Post Reply