"Segmentation fault" using vasp.6.3.0 with wannier90_3.1
Posted: Fri Mar 03, 2023 3:18 am
Dear developers,
When I run vasp 6.3.0 with wannier90_3.1, I met the following errors.
running on 4 total cores
distrk: each k-point on 4 cores, 1 groups
distr: one band on 1 cores, 4 groups
OpenACC runtime initialized ... 1 GPUs detected
vasp.6.3.0 20Jan22 (build Jan 3 2023 12:51:59) complex
POSCAR found type information on POSCAR SrV O
POSCAR found : 3 types and 5 ions
Reading from existing POTCAR
scaLAPACK will be used selectively (only on CPU)
Reading from existing POTCAR
LDA part: xc-table for Pade appr. of Perdew
found WAVECAR, reading the header
POSCAR, INCAR and KPOINTS ok, starting setup
FFT: planning ... GRIDC
FFT: planning ... GRID_SOFT
FFT: planning ... GRID
reading WAVECAR
the WAVECAR file was read successfully
initial charge from wavefunction
entering main loop
N E dE d eps ncg rms rms(c)
DAV: 1 -0.459594179453E+02 -0.45959E+02 -0.27844E-07 912 0.647E-03 0.465E-03
DAV: 2 -0.459594179608E+02 -0.15496E-07 -0.77451E-07 896 0.108E-02 0.911E-03
DAV: 3 -0.459594178787E+02 0.82125E-07 -0.11756E-07 832 0.436E-03 0.242E-03
DAV: 4 -0.459594178725E+02 0.61698E-08 -0.73940E-09 360 0.995E-04
Calling wannier_setup of wannier90 in library mode
Wannier90 mode
Computing MMN (overlap matrix elements)
Computing AMN (projections onto localized orbitals)
srun: error: nid003357: task 1: Segmentation fault
srun: launch/slurm: _step_signal: Terminating StepId=5867831.0
slurmstepd: error: *** STEP 5867831.0 ON nid003357 CANCELLED AT 2023-03-02T22:22:08 ***
srun: error: nid003357: task 3: Segmentation fault
srun: error: nid003357: task 2: Segmentation fault
srun: error: nid003357: task 0: Segmentation fault
---------------------------------------------------------------------------------------
However, after I comment out 'exclude_bands' in the INCAR, the calculation can run well.
I believe this error should be related to the "exclude_bands".
Hope you can fix this bug soon.
You can find all the test files in the attachment.
Best,
Ruiqi
When I run vasp 6.3.0 with wannier90_3.1, I met the following errors.
running on 4 total cores
distrk: each k-point on 4 cores, 1 groups
distr: one band on 1 cores, 4 groups
OpenACC runtime initialized ... 1 GPUs detected
vasp.6.3.0 20Jan22 (build Jan 3 2023 12:51:59) complex
POSCAR found type information on POSCAR SrV O
POSCAR found : 3 types and 5 ions
Reading from existing POTCAR
scaLAPACK will be used selectively (only on CPU)
Reading from existing POTCAR
LDA part: xc-table for Pade appr. of Perdew
found WAVECAR, reading the header
POSCAR, INCAR and KPOINTS ok, starting setup
FFT: planning ... GRIDC
FFT: planning ... GRID_SOFT
FFT: planning ... GRID
reading WAVECAR
the WAVECAR file was read successfully
initial charge from wavefunction
entering main loop
N E dE d eps ncg rms rms(c)
DAV: 1 -0.459594179453E+02 -0.45959E+02 -0.27844E-07 912 0.647E-03 0.465E-03
DAV: 2 -0.459594179608E+02 -0.15496E-07 -0.77451E-07 896 0.108E-02 0.911E-03
DAV: 3 -0.459594178787E+02 0.82125E-07 -0.11756E-07 832 0.436E-03 0.242E-03
DAV: 4 -0.459594178725E+02 0.61698E-08 -0.73940E-09 360 0.995E-04
Calling wannier_setup of wannier90 in library mode
Wannier90 mode
Computing MMN (overlap matrix elements)
Computing AMN (projections onto localized orbitals)
srun: error: nid003357: task 1: Segmentation fault
srun: launch/slurm: _step_signal: Terminating StepId=5867831.0
slurmstepd: error: *** STEP 5867831.0 ON nid003357 CANCELLED AT 2023-03-02T22:22:08 ***
srun: error: nid003357: task 3: Segmentation fault
srun: error: nid003357: task 2: Segmentation fault
srun: error: nid003357: task 0: Segmentation fault
---------------------------------------------------------------------------------------
However, after I comment out 'exclude_bands' in the INCAR, the calculation can run well.
I believe this error should be related to the "exclude_bands".
Hope you can fix this bug soon.
You can find all the test files in the attachment.
Best,
Ruiqi